The University of Arizona
Publications



Peer review publications (review articles can be found below)


Ruboyianes, M. V., M. Chen, M. S. DuBrava, J. E. J. Cherwa, and B. A. Fane. 2009. The expression of N-terminal deletion DNA pilot proteins inhibit the early stages of øX174 replication. J. Virol. 83: 9952-6. PMID: 19640994.

Cherwa, J. E. J., P. Sanchez-Soria, The 2007 Undergraduate Virology Laboratory Course, H. Wichman, and B. A. Fane. 2009. Viral adaptation to an antiviral protein enhances fitness above the uninhibited wild-type level J. Virol. 83:11746-50. PMID: 19726521

Cherwa, J. E. J., and B. A. Fane. 2009. Complete virion assembly with scaffolding proteins altered in the ability to perform a critical conformational switch. J. Virol. 83: 7391-6.  Editors’ Featured Article. PMID: 19474099.

Uchiyama, A., P. Heiman, and B. A. Fane. 2009. N-terminal deletions of the phiX174 external scaffolding protein affect the timing and fidelity of assembly. Virology 386:303-9. PMID: 19237183

Cherwa, J. E. Jr., Uchiyama, A., Fane B. A. (2008) Scaffolding proteins altered in the ability to perform a conformational switch confer dominant lethal assembly defects. J. Virol. 82: 5774-80. Editors’ Featured Article. PMID: 18400861.

Salim, O, Stilton, R. Cutliffe, L. Fane, B. A., Clarke, I. N. (2008) Behind the Chlamydial Cloak, the life-cycle of a virus Chp2 revealed. Virology 377: 440-445. PMID: 18570973.

Chen, M. Uchiyama, A., Fane, B. A. (2007) Eliminating the requirement of an essential gene product in an already very small virus: scaffolding protein B-free øX174, B-free.  J. Mol Biol. 373: 308-14. PMID: 17825320.

Skilton R. J., Cutcliffe L. T,  Pickett M. A., Lambden P. R. *Fane B. A.  Clarke I. N. (2007). Intracellular parasitism of chlamydiae: the specific infectivity of chlamydiaphage Chp2, in Chlamydophila abortus. J. Bact. 189: 4957-9.
*Corresponding author.

Uchiyama, A., Chen, M., Fane, B. A. (2007) Characterization and function of putative substrate specificity domain in Microvirus external scaffolding proteins.  J. Virol. 81: 8587-92. PMID: 17468245.

Uchiyama, A., Fane B. A. (2005) Identification of an interacting coat-external scaffolding protein domain required for both the initiation of øX174 procapsid morphogenesis and the completion of DNA packaging. J. Virol. 79: 6751-6. PMID: 15890913.

Clarke, I. N., Cutcliffe, L. T., Everson, J. S., Garner, S. A., Lambden, P. R.. Pead, P. J., Pickett,M. A. Brentlinger, K. L., Fane, B. A. (2004) Chlamydiaphage Chp2, a skeleton in the øX174 closet: scaffolding protein and procapsid identification.  J. Bact. 186: 7571-4. PMID: 15516569.

Hafenstein, S. L. , Chen, M., Fane, B. A. (2004) Genetic and functional analyses of the øX174 DNA binding protein: the effects of substitutions for amino acid residues that spatially organize the two DNA binding domains. Virology, 18: 204-13. PMID: 14972548.

Novak, C. R. , Fane, B. A. (2004)The functions of the N-terminus of the øX174 internal scaffolding protein,  a protein encoded in an overlapping reading frame, in a two scaffolding protein system. J. Mol. Biol. 335:383-90.  PMID: 14659765.

Morais, M., Fisher, M., Kanamaru, S., Fane, B. A., Rossmann, M. G. (2004) Conformational Switching of the øX174 scaffolding protein D during assembly. Mol. Cell. 15: 991-7.  PMID: 15383287

Bernal, R. A., Hafenstein S., Esmeralda R., Fane, B. A., Rossmann, M. G. (2004) The øX174 protein J mediates DNA packaging and viral attachment to host cells. J. Mol. Biol. 337:1109-22. PMID: 15046981.

Garner S. A., Everson, J. S., Lambden, P. R., Fane, B. A., Clarke I. N. (2004) Isolation, Molecular Characterisation and Genome Sequence of a Bacteriophage (Chp3) from Chlamydophila pecorum. Virus Genes. 28:207-14. PMID: 14976421.

Burch A. D., Fane, B. A. (2003) Genetic analyses of putative conformation switching and cross-species inhibitory domains in Microviridae external scaffolding proteins. Virology  310: 64-71. PMID: 12788631.

Everson, J. S., Garner, S. A.,  Lambden, P. R. ,Fane, B. A. Clarke, I. N. (2003)The host range of chlamydiaphages ØCPAR39 and Chp3., J. Bacteriol. 185:6490-2. PMID: 14563888.

Bernal, R. A., Hafenstein, S. , Olson, N. H., Bowman, V.D., Chipman, P.R., Baker, T. S., Fane, B. A, Rossmann, M. G. (2003) Structural studies of bacteriophage alpha3 assembly.  J. Mol. Biol. 325: 11-24. PMID: 12473449.

Hafenstein, S., Fane, B. A. (2002) øX174 genome-capsid interactions influence the biophysical properties of the virion: evidence for a scaffolding-like function of the genome during the final stages of morphogenesis. J. Virol. 76: 5350-6. PMID: 11991963.

Valentine C. R., Montgomery,  B. A., Miller, S. G., Delongchamp, R. R., Fane, B. A. Malling, H. V. (2002) Characterization of mutant spectra generated by a forward mutational assay for gene A of PhiX174 from ENU-treated transgenic mouse embryonic cell line PX-2. Environ. Mol. Mutagen. 39: 55-68. PMID: 11813297.

Brentlinger, K. L., Hafenstein, S. , Novak, C. R.  Fane, B. A. (communicating author), Borgon, R. McKenna, R., Agbandje-McKenna, M. (2002) Microviridae, a family divided. Isolation, characterization   and genome sequence of  øMH2K, a bacteriophage   of  the  obligate  intracellular  parasitic  bacterium  Bdellovibrio  bacteriovorus. J. Bacteriol. 184:1089-94. PMID: 11807069.

Everson, J.S., Garner, S. A., Fane B. , Liu, B-L., Lambden,  P. R., Clarke, I. N. (2002) Biological Properties and cell tropism of Chp2, a bacteriophage of the obligate intracellular Bacterium C. Abortus. J. Bacteriol. 184: 2748-54. PMID: 11976304.

Burch, A. D.,  Fane, B. A. (2000) Foreign and chimeric external scaffolding proteins as inhibitors of Microviridae morphogenesis. J. Virol. 74: 9347-9352. PMID: 11000202.

Burch, A. D., Fane, B. A. (2000) Efficient complementation by chimeric Microviridae internal scaffolding proteins is a function of the COOH-terminus of the encoded protein. Virology 270: 286-290. PMID: 10792987.

Lui, B. L., Everson, J. S., Fane, B. A., Giannikopoulou, P., Vretou, E., Lambden, P. R., Clarke, I. N. (2000) The molecular characterization of a bacteriophage (Chp2) from Chlamydia psittaci. J. Virol. 74: 3646-3469. PMID: 10729119.

Dokland, T., Bernal, R. A., Burch, A. , Pletnev, S., Fane, B. A., Rossmann M. G. (1999) The role of scaffolding proteins in the assembly of the small single-stranded DNA virus øX174. J. Mol. Biol. 288: 595-608. PMID: 10329166.

Burch, A. D. , Ta, J., Fane, B. A. (1999) Cross-functional analysis of the Microviridae Internal Scaffolding protein. J. Mol. Biol. 286: 95-104. PMID: 9931252.

Jennings, B.  Fane, B. A. (1997) Genetic analysis of the øX174 DNA binding protein. Virology 227: 370-377. PMID: 9018136.

Dokland, T., McKenna, R., Ilag, L. L., Bowen,  B. R., Incardona, N. L., Fane, B. A., Rossmann, M. G. (1997) Structure of a viral assembly intermediate with molecular scaffolding. Nature 389: 308-313. PMID: 9305849.

McKenna, R., Bowen,  B. R., Ilag, L. L., Rossmann, M. G., Fane B. A. (1996) Atomic Structure of the degraded procapsid particle of the bacteriophage G4: Induced structural changes in the presence of calcium ions and functional implications. J. Mol. Biol. 256: 736-750. PMID: 8642594.

Ekechukwu, M. C. , Oberste, D. J., Fane B. A. (1995) Host and øX174 mutations which affect the morphogenesis or stabilization of the 50S complex, a single stranded DNA synthesizing intermediate. Genetics 140: 1167-11174. PMID: 7498760.

Ekechukwu, M. C.  Fane, B. A. (1995) Characterization of the morphogenetic defects conferred by cold-sensitive prohead accessory and scaffolding proteins of øX174. J. Bacteriol. 177: 829-830. PMID: 7836321.

Fane, B. A., S. Shien, M. Hayashi. 1993. Second site suppressors of a cold sensitive external scaffolding  protein of bacteriophage øX174. Genetics 134: 1003-1011.

Fane, B. A., S. Head, M. Hayashi. 1992. The functional relationship between the J proteins of bacteriophages øX174 and G4 during phage morphogenesis. J. Bact.  174: 2717-2719.

Dalphin, M. E., B. A. Fane, M. O. Skidmore, M. Hayashi. 1992. Proteolysis of the bacteriophage øX174 prohead accessory protein, gpB, by the Escherichia coli ompT protease is not essential for phage maturation in vivo. J. Bact. 174: 2404-2406.

Fane, B. A.,  M. Hayashi. 1991. Second site suppressors of a cold sensitive prohead accessory protein of bacteriophage øX174. Genetics 128: 663-671.

Mitraki, A., B. Fane, C. Haase-Pettingell, J. Sturtevant, J. King. 1991. Global suppression of protein folding defects and inclusion body formation. Science 253: 54.

Fane, B., R. Villafane, A. Mitraki, J. King. 1991. Identification of global suppressors for temperature sensitive folding mutations of the P22 tailspike. J. Biol. Chem. 266: 11640.

Fane, B. A., J. King. 1991. Intragenic suppressors of folding defects in the P22 tailspike protein. Genetics 127: 263-277.

Fane, B. A., J. King, 1987. Identification of sites influencing the folding and subunit assembly of the P22 tailspike polypepetide using nonsense mutations. Genetics 117: 157-171.

Review articles, news and views articles and book chapters:

Zlotnick, A., and B. A. Fane. 2010 (Estimated) Mechanisms of Viral Assembly. In M. Agbandje-McKenna and R. McKenna (ed.), Virus Strucutre and Assembly, Biomolecular Science Series. Royal Society of Chemistry, London. In press.

Fane, B. A. (2007) The Microviridae. In The Encyclopedia of Virology. Eds: B. Mahy, M. V. Regenmortel. Elsevier, London. In press.

Fane, B.A. (2006) The Microviridae, In: Virology. Ed: N. Acheson. John Wiley and Sons. In press. (Education Textbook Chapter).

Fane, B. A. Brentlinger, K. L., Burch, A. D. , Chen, M., Hafenstein, S.  Moore, E., Novak, C. R., Uchiyama, A. (2006) øX174 et al. The Microviridae. In: The Bacteriophages Volume 2. pp 129-145. Ed. R. Calendar. Oxford Press.

Fane, B. A. (2006) The Microviridae. In: Virus Taxonomy: The Classification and Nomenclature of Viruses. The Eighth Report of the International Committee on Taxonomy of Viruses . Eds:  A. Ball, C. Fauquet, M.  Mayo, J. Maniloff. Academic Press / Elsevier. 

Fane, B. A. (2005) A four-dimensional structure of T4 infection. Nat. Struct. Mol. Biol. 12: 739-740. PMID: 16142226.

Fane, B. A., Prevelige, P. E. (2003) Mechanisms of Scaffolding-Assisted Viral Assembly. In: Advances in Protein Chemistry Eds: W. Chiu, J. Johnson, in press. Academic Press / Elsevier. 64: 259-99.

Fane, B. A. (2001) The Genetics of øX174, From nucleotide sequence to atomic structure. In: The Encyclopedia of Genetics. Ed: S. Brenner and J. Miller. Academic Press, San Diego. pp. 1450-1454.

Fane, B. A. and M. Hayashi. 1993. Bacteriophage øX174.pp.1.75-1.77.  In: Genetic Maps, Book 1. Ed: S. J. O'Brien. Cold Spring Harbor Press, Cold Spring Harbor, NY.

King, J., Fane, B., Haase-Pettingell, C. , Mitraki, A., Villafane,  R., Yu, M-H. (1990). Identification of amino acid sequences influencing intracellular folding pathways using temerparture sensitive folding mutations. In: Protein Folding: Deciphering the Second Half of the Genetic Code. Eds: L. M. Gierasch and J. King. AAAS. pp. 225-240.

King, J., Fane, B. Haase-Pettingell,  H., Mitraki,  A. and Villafane, R. (1990).Genetic analysis of polypeptide chain folding and misfolding in vivo. In: Protein Design and the Development of New Therapeutics and Vaccines. Eds: J. B. Hook and G. Poste. Plenum. Press. pp. 59-78.