Publications
-- last updated June 2006
--
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McMahon
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McMahon, M. M. 2005.
Phylogenetic relationships and floral evolution in the papilionoid
legume clade Amorpheae. Brittonia 57: 397-411. pdf.
McMahon,
M. M. and L. Hufford. 2005. Evolution and development in the
amorphoid clade (Amorpheae: Papilionoideae: Leguminosae): petal loss
and dedifferentiation. International
Journal of Plant Sciences 166: 383-396. pdf.
Ané,
C., J. G. Burleigh, M. M. McMahon, and M. J. Sanderson.
2005. Covarion structure in plastid genome evolution: a new
statistical test. Molecular
Biology and Evolution 22: 914-924. access.
Hufford,
L., M. M. McMahon, R. O’Quinn, M. S. Poston. 2005. A phylogenetic
analysis of Loasaceae subfamily Loasoideae based on plastid DNA
sequences. International
Journal
of Plant Sciences 166: 289-300.
pdf.
Driskell,
A. C., C. Ané, J. G. Burleigh, M. M. McMahon, B. C. O’Meara, and
M. J. Sanderson. 2004. Prospects for building the tree of
life from large sequence databases. Science 306: 1172-1174. pdf (paper), pdf (supp).
McMahon,
M. and L. Hufford. 2004. Phylogeny of Amorpheae (Fabaceae:
Papilionoideae). American
Journal of Botany 91:
1217-1228. pdf.
Hufford,
L. and M. McMahon. 2004. Morphological evolution and
systematics of Synthyris and Besseya (Veroniceae): A phylogenetic
analysis. Systematic Botany
29:716-736. pdf.
Hufford,
L. and M. McMahon, 2003. Beyond morphoclines and trends: the
elements of diversity and the phylogenetic patterning of morphology. In
T. F. Stuessy, V. Mayer & E. Hörandl (eds.). Deep Morphology:
Toward a Renaissance of Morphology in Plant Systematics. Koeltz,
Königstein.
Hufford,
L., M. M. McMahon, A. M. Sherwood, G. Reeves, and M. W.
Chase. 2003. The major clades of Loasaceae: phylogenetic
analysis
using the plastid matK and trnL-trnF regions. American Journal of
Botany 90:1215-1228. pdf.
McMahon,
M. and L. Hufford. 2002. Morphology and structural homology
of corolla-androecium synorganization in the tribe Amorpheae (Fabaceae:
Papilionoideae). American
Journal of Botany 89(12):
1884-1898. pdf.
Maddison,
W. and M. McMahon. 2000. Divergence and reticulation among
montane populations of a jumping spider (Habronattus pugillis
Griswold). Systematic Biology
49:400-421. pdf.
Hufford,
L. and M. McMahon. 2000. Book review: Scotland, R.,
Penington, R. T. (eds.): Homology and Systematics: Coding Characters
for Phylogenetic Analysis. Plant
Systematics and Evolution
226:122-126. pdf.
McMahon,
S. [M.], M. Fishbein, and A. Johnson. 1994. Noteworthy
collections. Arizona. Madroño
41:330-331.
Publications submitted or in press
McMahon,
M. M. and M. J. Sanderson. 2006. Phylogenetic supermatrix analysis of
GenBank sequences from 2228 Papilionoid legumes. Systematic Biology: 55, In press.
Sanderson, M. J. and M. M. McMahon. Inferring angiosperm
phylogeny from EST data with widespread gene duplication. BMC Evolutionary Biology: In
press.
Sanderson, M. J., C. Ané, O. Eulenstein, D. Fernandez-Baca, J.
Kim, M. M. McMahon, and R. Piaggio-Talice. Fragmentation of large data
sets in phylogenetic analyses. Mathematics
of Evolution and Phylogenetics II, M. A. Steel and O. Gascuel,
ed.s. In press.
Publications in
preparation
Burleigh, J. G., B. C. O'Meara,
and M. M. McMahon. Efficiency of algorithms for maximum
likelihood phylogenetic inference. Molecular Phylogenetics and
Evolution.
McMahon, M. M. and M. J. Sanderson. Bias and variance in
phylogenetic inference.
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