WFSc 578

Files for Data Problems

• Problem 1
• Problem 2

Examples and Code

• MARK input file for mongoose
• MARK input file for mourning doves
• MARK input file for Cooper's hawks, 2010 version
• R code for dynamic-occupancy models for silky pocket mice
• MARK input file for Arizona cotton rats
• MARK input file for Heather voles
• R code to access data for Lucy's warblers
• R code to access data for bags and balloons
• R code for estimating abundance from distance data - Botteri's sparrows
• R code for estimating abundance from point counts - elf owls
• R code for creating plots to illustrate effects of model factors - tortoises and distance data
• R code for single-season occupancy
• Some R code for creating population data and sampling distributions
• Illustration for sampling distributions

Readings

• Lebreton et al. 1992 - modeling survival
• Shaffer 2004 - nest survival
• MacKenzie et al. 2003
• Bayne et al. 2008
• Royle and Dorazio 2006
• Royle 2004 - count data
• Royle et al. 2004 - distance data
• Fiske and Chandler 2011
• MacKenzie 2006
• Symonds and Moussali 2011
• Johnson and Omland 2004 (this one is optional)
• MacKenzie et al. 2002
• Generalized Linear Models
• Notes on Sampling Design

Software

• Vignette on fitting dynamic occupancy models in UNMARKED is here
  
• Information on Program MARK is here
  
• Information on UNMARKED is here
  
• -- UNMARKED overview (pdf) is here
  
• -- UNMARKED reference manual (pdf) is here
  
• -- UNMARKED online discussion group is here
  
• Download R for Windows here